Github "File Not in Any Repository"

The Github interface is working, except for my own account. I wrote a few Smartapps, uploaded them to Github, added my repository to “Settings” (arnbme smartthings master) and “Source Code Options”, but nothing shows when selecting the account in “Update From Repo”, and the my Apps show in Green on my Smartapps page with the message “file not found in any repository” when placing the cursor over the module name.

Thank you in advance for any suggestions on how to fix this.

My github link
https://github.com/arnbme/smartthings

http://docs.smartthings.com/en/latest/tools-and-ide/github-integration.html#repository-structure

Thank you for the link. I had to delete all existing repositories then start from step one of the Git Setup. My brain fried at Step 4 and 5, however commit worked and the files are in the Git repository.